Dooom is a Doom port for the Dingoo Native OS by the_wub, which itself is based mainly on the Chocolate Doom source port by Simon Howard.
I’ve uploaded version 1.1 to the google code page. This version lets you put all your wads in the dooom folder with a separate command line file for each wad. The wad selector lets you select either a wad file or a command line file and I’ve changed the file format of the command line files to .txt to make editing easier with notepad!
The really important bit: You must also specify the wad needed for a total conversion or modded wad with the -iwad command line option.
So, for Aliens Total conversion I now have this:
chocolate-doom -deh atcud19.deh -merge alitcsf.wad -file alitcsnd.wad alitcwad.wad -iwad doom.wad
You can save the command line file as anything you like .txt This is a lot easier to use now but I will have a look at getting it working with wads in separate folders with a proper savegame folder for each.