SNES9x for 3DS is a high-compatibility SNES emulator for your old 3DS / 2DS. It runs many games at full speed (60 fps). It supports games that use CX4 chip (Megaman X2/X3), and the SDD-1 chip (Star Ocean, Super Street Fighter 2 Alpha). It can also play games that use the SuperFX chip (Yoshi's Island, etc) but they run with plenty of frame skips. It has generally much high compatibility than existing SNES emulators on the old 3DS because it uses Snes9x 1.43 as a base, and is a good alternative if your existing emulators cannot play all the games. Read more about SNES9x 3DS v1.20 (SNES emu for 3DS)
Category: Nintendo 3DS
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Craftus Reloaded is a Minecraft clone for 3DS. Read more about Craftus Reloaded v0.3 Pre 2 (3DS misc)
GodMode9 Explorer by d0k3 is a full access file browser for the Nintendo 3DS console. It gives you access to your SD card, to the FAT partitions inside your SysNAND and EmuNAND and to basically anything else. Among other functionality you can copy, delete, rename files and create folders. You can find the source here. Read more about GodMode9 Explorer v1.4.3 (3DS Application)
mGBA is a Game Boy Advance emulator written in C. The project started in April 2013 with the goal of being fast enough to run on lower end hardware than other emulators support, without sacrificing accuracy or portability. Even in the initial version, games generally play without problems. It is loosely based on the previous GBA.js emulator, although very little of GBA.js can still be seen in mGBA. Read more about mGBA v0.6.1 (GBA emu for 3DS)
GodMode9 Explorer by d0k3 is a full access file browser for the Nintendo 3DS console. It gives you access to your SD card, to the FAT partitions inside your SysNAND and EmuNAND and to basically anything else. Among other functionality you can copy, delete, rename files and create folders. You can find the source here. Read more about GodMode9 Explorer v1.4.2 (3DS Application)
Zelda Time to Triumph (Zelda 3T) is a fandmade Zelda game, ported to Nintendo 3DS by nop90. Read more about Zelda Time to Triumph (Zelda 3T) v1.0 (3DS Game Port)
Zelda Time to Triumph (Zelda 3T) is a fandmade Zelda game, ported to Nintendo 3DS by nop90. Read more about Zelda Time to Triumph (Zelda 3T) v0.2 Alpha (3DS Game Port)
Zelda Time to Triumph (Zelda 3T) is a fandmade Zelda game, ported to Nintendo 3DS by nop90. Read more about Zelda Time to Triumph (Zelda 3T) v0.1 Alpha (3DS Game Port)
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FBI is an open source file and title manager by Steveice10 for the Nintendo 3DS. Discussion via GBAtemp. Read more about FBI v2.4.12 (3DS Application)
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Meritous is an action-adventure dungeon crawl game. It's homepage can be found here: http://asceai.net/meritous/. Ported to Nintendo 3DS by nop90. Read more about Meritous v1.4-1 (3DS Game Port)